Publications

View publications by this faculty member from January 1, 2008 - present

Gracia-Hernandez M., Yende A.S., Gajendran N., Alahmadi Z., Li X., Munoz Z., Tan K., Noonepalle S., Shibata M., Villagra A. (2024). Targeting HDAC6 improves anti-CD47 immunotherapy. J Exp Clin Cancer Res.  43(1):60. PMID: 38414061. View online

Yende, A.S., Williams, E.C., Pletcher, A., Helfand, A., Ibeawuchi, H., North, T.M., Latham, P.S., Horvath, A., and Shibata, M. (2023). TRIM28 promotes luminal cell plasticity in a mouse model of prostate cancer. Oncogene. 42(17):1347-1359. PMID: 36882525 View online

Vasciaveo, A., Arriaga, J.M., de Almeida, F.N., Zou, M., Douglass, E.F. Picech, F., Shibata, M., Rodriguez-Calero, A., de Brot, S., Mitrofanova, A., Chua, C.W., Karan, C., Realubit, R., Pampou, S., Kim, J.Y., Afari, S.N., Mukhammadov, T., Zanella, L., Corey, E., Alvarez, M.J., Rubin, M.A., Shen, M.M., Califano, A., Abate-Shen, C. (2023) OncoLoop: A Network-Based Precision Cancer Medicine Framework. Cancer Discov. 13(2):386-409. PMID: 36374194. View online

Pletcher, A. and Shibata, M. (2022) Prostate Organogenesis. (Review) Development 149 (12). PMID: 35726824. View online

Le, K., Sun, J., Khawaja, H., Shibata, M., Maggirwar, S., Smith, M., and Gupta, M. (2021). Mantle Cell Lymphoma Cells Polarize Macrophages Toward Protumor-Associated M2-Phenotype. Blood Advances 5(14):2863-78. PMID: 34297045.

Shibata, M.#, Epsi, N.J., Xuan, S., Mitrofanova, A., and Shen, M.M#. (2020) Bipotent progenitors do not require androgen receptor for luminal specification during prostate organogenesis. Stem Cell Reports 15(5):1026-1036. PMID: 33176121. (#corresponding authors).View online

Bowen, C., Shibata, M., Zhang, H., Sarah K. Bergren, S.K., Shen, M.M., and Gelmann, E.P. (2020) CRISPR/Cas9-mediated point mutation in Nkx3.1 prolongs protein half-life and reverses effects Nkx3.1 allelic loss. Cancer Research 80 (21):4805-4814. PMID: 32943441.View online

Crowley, L., Cambuli, F., Aparicio, L., Shibata, M., Robinson, B.D., Xuan, S., Li, W., Hibshoosh, H., Loda, M., Rabadan, R., and Shen, M.M. (2020) A single-cell atlas of the mouse and human prostate reveals heterogeneity and conservation of epithelial progenitors. eLife 2020;9:e59465. PMID:32915138.View online

Joglekar, T., Lin, J., Shibata. M. (2020) ONECUT2 is a novel target for treatment of castration-resistant prostate cancer. (Editorial) Expert Opinion on Therapeutic Targets 24(2): 89-90. PMID: 31983247. View online

Shibata, M., and Shen, M. M. (2015) Stem cells in genetically-engineered mouse models of prostate cancer. (Review) Endocrine-Related Cancer 22(6): T199-208. PMCID: PMC4618022. View online

Alexander, K.A., Wang, X., Shibata, M., Clark, A.G., and García-García, M. J. (2015) TRIM28 controls genomic imprinting through distinct mechanisms during and after early genome-wide reprogrammingCell Reports 13(6): 1194-205. PMCID: PMC4644443. View online

Chua, C. W.*, Shibata, M.*, Lei, M.*, Toivanen, R., Barlow, L. J., Bergren, S. K., Badani, K. K., McKiernan, J. M., Benson, M. C., Hibshoosh, H, and Shen, M. M. (2014) Single luminal epithelial progenitors can generate prostate organoids in culture. Nature Cell Biology 16: 951-961. PMCID: PMC4183706. (*co-first authors). View online

Kruithof-de Julio, M.*, Shibata, M.*, Desai, N., Reynon, M., Halili, M. V., Hu, Y. P., Price, S. M., Abate-Shen, C. and Shen, M. M. (2013) Canonical Wnt signaling regulates Nkx3.1 expression and luminal epithelial differentiation during prostate organogenesis. Developmental Dynamics 242: 1160-1171. PMCID: PMC3788082. (*co-first authors). View online

Shibata, M., and Shen, M. M. (2012) The roots of cancer: Stem cells and the basis for tumor heterogeneity. (Review) BioEssays 35: 253-260. PMCID: PMC3687804. View online

Shibata, M., Blauvelt, K. E., Liem, K. F. Jr., and García-García, M. J. (2011) TRIM28 is required by the mouse KRAB domain protein ZFP568 to control convergent extension and morphogenesis of extraembryonic tissues. Development 138: 5333-5343. PMCID: PMC3222210. View online

Shibata, M., and García-García, M. J. (2011) The mouse KRAB zinc-finger protein CHATO is required in embryonic-derived tissues to control yolk sac and placental morphogenesis. Developmental Biology 349: 331-341. PMCID: PMC3023455. View online

García-García, M. J., Shibata, M., and Anderson, K. V. (2008) Chato, a KRAB zinc-finger protein, regulates convergent extension in the mouse embryo. Development 135: 3053-3062. PMCID: PMC2583081. View online